Software

MATLAB code for classification of ASD based on RS-fMRI scans from the ABIDE 1 repository. MATLAB code is also provided to demonstrate the double dipping problem. The corresponding paper describing the methods in more detail is currently under review.

DOWNLOAD MATLAB CODE

MR Tool for SPM12: Intensity Inhomogeneity Correction 
Summary: Intensity Inhomogeneity Correction of Structural MR Images: A Data-Driven Approach to Define Input Algorithm Parameters in SPM. See the paper describing this method external pageherecall_made.

MR Tool for SPM12: Multimodal Mapping
Summary: Multimodal mapping of brain structural properties by combining T1- and T2-weighted MR imaging data. A toolbox for the generation of the multimodal T1-w/T2-w ratio image. See the paper describing this method external pageherecall_made.

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The NCM Lab developed a virtual water maze for testing spatial learning and memory processes in human. We have used the maze to make a cross-species comparison of the brain areas supporting spatial learning (external pagepapercall_made), to investigate differences in spatial learning between males and females (external pagepapercall_made), and to examine learning related changes in functional connectivity between hippocampus and striatum (external pagepapercall_made).

The maze runs in Matlab and requires the Simulink 3D Animation toolbox and Psychtoolbox. Be sure to take a look at the included readme file for a list of considerations to get the code up and running.

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